Sheila - are you saying that he has been on cyclophosphamide for a year and they intend to keep him on it even longer? It is a highly toxic drug with long term implications for serious side effects that do not go away when you stop taking it. The effects are cumulative and he may need to use the drug again if he has a flare in the future. Take it for too long and it will not be available to safely use again. I have pretty much used up my own allocation and will be hunting for an alternative if I need to stop a flare.
The usual regime is to switch to something like azathioprine after about six months.
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